Protein Data Banks Software

  • User friendly PDB (Protein Data Bank) file editor User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files.

    • PDB_Editor_FIX090203.jar
    • Jonas Lee
    • Shareware ($)
    • 727 Kb
    • Win All
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  • User friendly PDB (Protein Data Bank) file editor with graphic user interfaceTool for protein crystallographers to expedite selective edit / data extraction / analysis of their PDB files. ...

    • Protein Data Bank File Editor
    • Jonas Lee
    • Freeware (Free)
    • Windows
  • A protein / macromolecule visualization tool that runs as a screensaver module. It colorfully renders PDB (Protein Data Bank) files using unique algorithms. The module automatically annotates, colors, and rotates structures for an educational and. ...

    • Freeware (Free)
    • 9.6 Mb
    • Mac OS X 10.6 or later
  • Protein Data Bank transformed into an SQL database with a very powerful search engine and a rich web interface. The engine combines chemical, sequence and 3D structure searches. The interface provides statistics, sequence and 3D structure. ...

    • pdbemotif.tar.gz
    • pdbsam
    • Freeware (Free)
    • 116.43 Mb
    • Windows; BSD; Linux
  • Analyzes water molecules in the protein data bank file to look for polygonal water structures by looking for H-bond connections. GUI with automatic statistics, and PDB polygon drawer for viewing in Coot (Separate x-ray modelling software). ...

    • Water_Polygon_Finder_-_Execu table_only.zip
    • pdbwaterpolygon
    • Freeware (Free)
    • 99 Kb
    • Windows
  • PSIMAP is the Protein Structural Interactome MAP, a map of all the domain level protein-protein interactions in the Protein Data Bank (PDB). PSIsoft is an archive of the software used to generate and analyse. ...

    • DomainInter.jar
    • psisoft
    • Freeware (Free)
    • 99 Kb
    • Windows; Mac; Linux
  • soaPDB is a clean way to Search, Organize, and get e-mail Alertsfor saved PDB (Protein Data Bank) queries.

    • Freeware (Free)
    • Windows
  • MS2DB is a new XML-based file format to store protein data for use with peptide tandem mass spectrometry. It allows for clearer results and more powerful features than the older FASTA format.

    • Freeware (Free)
    • Windows
  • ProPHAnE: Proteomics result Pruning and Homology group Annotation Engine A perl script based workflow for annotation of protein data coming from the 'Mascot' (Matrix Science) and 'Scaffold' (Proteome Software) pipeline.

    • Freeware (Free)
    • Windows
  • 1. Formats DNA sequencing data into a human readable format, with support for base pairs, chromatograph data, quality scores, sequence labeling, and comparing multiple sequences all at once. 2. TODO: RNA / Protein data.

    • Freeware (Free)
    • Windows
  • The i2b2 Center is developing a scalable informatics framework that will bridge clinical research data and the vast data banks arising from basic science research in order to better understand the genetic bases of complex diseases.

    • i2b2 Client Server
    • i2b2.org
    • Freeware (Free)
    • Windows
  • J3dViz is a five graphical Java Application Programming Interfaces (APIs) for viewing of three dimensional structures of protein from the Protein Data Bank.

    • Freeware (Free)
    • Windows

Related:  Protein Data Banks - Protein Data Bank - Not Enough Protein - Too Much Protein - Best Protein Supplement

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