Protein Data Banks Software

User friendly PDB (Protein Data Bank) file editor User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files.

User friendly PDB (Protein Data Bank) file editor with graphic user interfaceTool for protein crystallographers to expedite selective edit / data extraction / analysis of their PDB files. ...

A protein / macromolecule visualization tool that runs as a screensaver module. It colorfully renders PDB (Protein Data Bank) files using unique algorithms. The module automatically annotates, colors, and rotates structures for an educational and. ...

Protein Data Bank transformed into an SQL database with a very powerful search engine and a rich web interface. The engine combines chemical, sequence and 3D structure searches. The interface provides statistics, sequence and 3D structure. ...

Analyzes water molecules in the protein data bank file to look for polygonal water structures by looking for H-bond connections. GUI with automatic statistics, and PDB polygon drawer for viewing in Coot (Separate x-ray modelling software). ...

PSIMAP is the Protein Structural Interactome MAP, a map of all the domain level protein-protein interactions in the Protein Data Bank (PDB). PSIsoft is an archive of the software used to generate and analyse. ...

soaPDB is a clean way to Search, Organize, and get e-mail Alertsfor saved PDB (Protein Data Bank) queries.

MS2DB is a new XML-based file format to store protein data for use with peptide tandem mass spectrometry. It allows for clearer results and more powerful features than the older FASTA format.

ProPHAnE: Proteomics result Pruning and Homology group Annotation Engine A perl script based workflow for annotation of protein data coming from the 'Mascot' (Matrix Science) and 'Scaffold' (Proteome Software) pipeline.

1. Formats DNA sequencing data into a human readable format, with support for base pairs, chromatograph data, quality scores, sequence labeling, and comparing multiple sequences all at once. 2. TODO: RNA / Protein data.

The i2b2 Center is developing a scalable informatics framework that will bridge clinical research data and the vast data banks arising from basic science research in order to better understand the genetic bases of complex diseases.

J3dViz is a five graphical Java Application Programming Interfaces (APIs) for viewing of three dimensional structures of protein from the Protein Data Bank.