Primer Design Software

  • Primer Design is a simple utility created in order to design DNA primers for mutagenesis in the BGME lab (JHU). It allows users to select or enter background sequence and add current and new mutations. During the design process, users are presented. ...

    • Freeware (Free)
    • Windows All
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  • ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological. ...

    • Freeware (Free)
    • 241 Kb
    • Windows; BSD; Mac; Solaris; Linux
  • RAPD Primer Design from Metagenomes (RPD-M) scans metagenome sequences identifying and determining relative frequency of candidate primers for Random Amplification of Polymorphic DNA (RAPD). ...

    • RPD-M_v1-0.tar.gz
    • rpd-m
    • Freeware (Free)
    • 16 Kb
    • BSD; Mac; Linux
  • Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters. ...

    • primer3-2.3.2.tar.gz
    • primer3
    • Freeware (Free)
    • 2.44 Mb
    • Windows; BSD; Linux
  • ORFprimer is a Java-based software specially created for automatical primer design. It is based on our previously released software ORFer that reads the GenBank XML- and fasta- sequence format. Protein sequences are typically downloaded by simply. ...

    • Freeware (Free)
    • Windows All
  • Extensive Primer Design Support Primer Premier is a comprehensive primer design tool for PCR, hybridization, cross species, sequencing and allele specific polymerase chain reaction. Integrated Alignment Primer Premier fully integrates multiple. ...

    • Shareware ($49.99)
    • 13.62 Mb
    • Windows XP, 2000, 98, Me, NT
  • This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. "Novel computational methods for increasing PCR primer design effectiveness in directed sequencing". BMC Bioinformatics 2008,. ...

    • Freeware (Free)
    • 181.36 Mb
    • Windows; Mac; Linux
  • Primer design, sequence statistics, and indel coding according to various schemes.

    • Freeware (Free)
    • 542 Kb
    • Win All
  • IMP is an automated tool for intron-flanking primer design based off of Expressed Sequence Tags (ESTs). It's intended for use in species with limited to no genomic sequence data. ...

    • IMP-1.0.tar.gz
    • code
    • Freeware (Free)
    • 198 Kb
    • BSD; Mac; Linux
  • Project to create a set of algorithms which will identify and isolate mRNA isoforms through primer design for RT-PCR techniques..

    • Freeware (Free)
    • Windows
  • MethMarker facilitates the design and optimization of gene-specific DNA methylation assays. Beyond its use as an epigenetic primer-design tool, it provides extensive support for epigenetic biomarker optimization.For a given gene or genomic region, MethMarker helps design DNA methylation assays for any of the following protocols: COBRA (combined bisulfite restriction analysis) bisulfite SNuPE (single nucleotide primer extension) bisulfite .

    • Shareware ($)
    • 25.2 Mb
    • Win All
  • Helps design successful SYBR Green, TaqMan, LNA spiked TaqMan, molecular beacons for both standard and NASBA assays, Scorpions and FRET assays by interpreting BLAST results for specificity and locating oligos avoiding template structures. - Optimal. ...

    • Demo ($)
    • 19 Mb
    • Any Platform

Related:  Primer Design - Dna Primer Design - Primer Design Program - Primer Design Software - Design Pcr Primer

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