Ingenuity Pathway Analysis Software

Name: SPA Full name: SNP based pathway analysis Maintainer: jiangyongshuai@gmail.com liuguiyou1981@163.com Language: R package Description: SPA is an R package which can identify disease or phenotype related pathways. Input rs# and ...

The Katsura tool overlays microarray gene expression data, proteomics, and similar biological data onto metabolic pathways. [Pathogen Functional Genomics Resource Center (PFGRC) @ J. Craig Venter Institute. ...

Crude Metabolic Pathway Analysis visualization software. For a software engineering class..

A command-line tool that performs pathway analysis. Pathway analysis based on Genome-Wide Association Study (GWAS) data has become popular as a secondary analysis strategy. Although many pathway analysis tools have been developed for case-control study, there is no tool that can use all information from raw genotypes in general nuclear families.

GeXpert is an expert system that can be used for genetics and metabolic pathway analysis. GeXpert can help Biotechnologists do their work faster, reducing the time required for performing, analyzing and storing the results of Bioinformatics. ...

The TRF-pathway package implements the powerful two-stage random forest based pathway analysis. The manuscript discussing the method is currently under revision at PLoS. ...

Genome Expression Pathway Analysis Tool - Analysis and Visualization of Microarray Gene Expression Data under Genomic, Proteomic and Metabolic Context. ...

This project is aimed at providing useful thermodynamic tools for biochemists, including formation energy estimation of virtually every biochemical compound and metabolic pathway analysis and profiling.

SeqGene is an open-source software for mining next-gen sequencing datasets SeqGene is an open-source software for mining next-gen sequencing datasets, focusing on post-alignment quality control, SNP and indel identification and annotation, RNA expression quantification, allele specific expression, and expression-genotying association analysis. SeqGene is especially suited for RNA-seq and exonome-seq applications, with focus on protein coding and regulatory regions of a genome.

BFRM is a comprehensive implementation of sparse statistical models for high-dimensional data analysis BFRM is a comprehensive implementation of sparse statistical models for high-dimensional data analysis, structure discovery and prediction.The framework of sparse latent factor modelling coupled with sparse regression and anova for multivariate data is relevant in many exploratory and predictive problems with very high-dimensional multivariate observations.

This program visualizes pathways. The user can display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). Automatic pathway update from KEGG, BioCarta and GenMAPP.

The Multiple Regression Analysis and Forecasting template provides a reliable identification of value drivers and forecasting business plan data. Advanced statistical tests performed include significance, autocorrelation and multicollinearity.