JSiteDescriptor v.1.0

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A set of java programs that extract coordinate and chemical information from PDB files.

The binding site regions are extracted using grid based scheme.

For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too).

A set of java programs that extract coordinate ... A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch ...

 
  • JSiteDescriptor
  • 1.0
  • Kalidas Yeturu
  • Windows
  • Freeware
  • 830 Kb
  • 167
  • Free
 
 

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Other software of Kalidas Yeturu
  • LigandAlign  v.1.0This software is developed by Kalidas (http://openwetware.org/wiki/Kalidas_Y) as part of his Ph.D. thesis. The method enables alignment of ligand molecules considered molecular graphs. It is useful in the domain of drug discovery and bioinformatics.
  • PocketDepth : binding site prediction  v.1.0PocketDepth helps determine binding grooves for protein molecules. Applicable in Bioinformatics and Drug discovery.
    Literature - http://www.ncbi.nlm.nih.gov/pubmed/17949996
    Author's thesis - http://openwetware.org/wiki/Kalidas_Y ...

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