Protein Structure Database Software

  • The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement. ...

    • Freeware (Free)
    • 97 Kb
    • Windows; Mac; Linux
  • Advertisement
    Advertisement
  • The Princeton Protein Orthology Database (P-POD), developed by the Genome Databases Group at Princeton, computes and displays families of orthologs between multiple organisms.

    • The Princeton Protein Orthology Database
    • Sven Heinicke
    • Freeware (Free)
    • Windows
  • HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution. ...

    • hoppscore-2.02.tar.gz
    • hoppscore
    • Freeware (Free)
    • 2.29 Mb
    • Windows; Linux
  • Software to identify cavities and crevices in proteins. The goal is to be able to take a protein structure, and to differentiate between five different types of environments for each residue: buried, surface, interfacial, cavity, or. ...

    • Freeware (Free)
    • 43 Kb
    • N/A
  • The project implements Protein Folding on a CBE. The role of water on folding under different environments is studied through visualization results. It acts as a tool to visualize the folding of an amino acid sequence into a 3D protein structure.

    • Freeware (Free)
    • Windows
  • Software for storing and distributing proteomics data. Main focus is protein structure and mass spectrometry data. Sequences and mass spectrometry spectra are stored in a mysql database.

    • Freeware (Free)
    • Windows
  • The AWS Docket is software, which creates on your hard disk the same file structure as it is on archive disks, such as CD-s, DVD-s, or hard disks, pen drives, memory cards... AWS Docket offers the off-line disks file structure database for Windows.

    • Shareware ($29.90)
    • 2.2 Mb
    • Windows
  • NOC is designed for protein structure visualizaing and analysis, for crystallographic mapping and modelling, for Gromacs/Amber MD trajectories viewing and analysis. NOC is a open source project and is also distributed with precompiled binaries for MS. ...

    • NOCH
    • NOC
    • Freeware (Free)
    • 3.5 Mb
    • Windows 2003, XP, 2000, 98, NT, Unix, Linux
  • A proteomics analyzation software capable of extracting information from the online universal protein resource database UniProt. ProteinID Finder imports your mass spectrometer analyzed protein lists (uniprot accession numbers) into experiments and. ...

    • Freeware (Free)
    • 9.5 Mb
    • Mac OS X 10.4 or later
  • Several RNA and protein structure volume calculation Several RNA and protein structure volume calculation tools..

    • Freeware (Free)
    • 249 Kb
    • Mac; Linux
  • Ab Initio protein structure prediction methods generate numerous structural candidates, which are referred to as decoys. Calibur is an efficient tool for finding the decoy with the most number of neighbors within a threshold. ...

    • calibur.tar.gz
    • calibur
    • Freeware (Free)
    • 28 Kb
    • Windows; BSD; Linux
  • A gene and protein homology database toolset that uses existing data from ensembl and entrezgene online A gene and protein homology database toolset that uses existing data from ensembl and entrezgene online databases..

    • Freeware (Free)
    • 11.29 Mb
    • N/A

Related:  Protein Structure Database - Protein Structure Function - Primary Protein Structure - Protein Sequence Database - Foxpro Database Structure

Pages : 1 | 2 | 3 >

Freeware