Dna Sequencing Berkeley Software


  • The DNA Sequence Read Toolkit is a set of programs to convert data from DNA sequencing instruments into formats suitable for archiving, viewing or for onward processing (for example alignment or. ...

    • Freeware (Free)
    • 171 Kb
    • BSD; Linux
  • 1. Formats DNA sequencing data into a human readable format, with support for base pairs, chromatograph data, quality scores, sequence labeling, and comparing multiple sequences all at once. 2. TODO: RNA / Protein data.

    • Freeware (Free)
    • Windows
  • Jnomics was specially designed as a cloud-scale sequence analysis suite. The project was built in order to help meet the computational challenges presented by the continuing revolution in massively parallel DNA sequencing technologies. In total,. ...

    • Freeware (Free)
    • Windows All
  • Have you ever needed to generate easy to read Quality Reports for your DNA sequencing? Have you ever needed to sort your DNA trace files by quality? Have you ever needed to change the comments tag in your Chromatograms? If so, this software suite is. ...

    • Mac_Sequence_View_Free.zip
    • gotoes.org
    • Freeware (Free)
    • 2.8 Mb
    • Mac OS X 10.3 or later
  • Meta Assembler for de novo assembly results. GARM (Genome Assembly Reconciliation and Merging) is a pipeline to merge results from different assemblers or results from different DNA sequencing. ...

    • Freeware (Free)
    • 70 Kb
    • Linux
  • This cleans unwanted textual information from DNA sequencing This cleans unwanted textual information from DNA sequencing results.

    • Sequence_Cleaner_v1.0.zip
    • s-cleaner
    • Freeware (Free)
    • 10 Kb
    • N/A
  • Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, this code base was released as open source in 2006 by. ...

    • tracetuner_3.0.6beta.tar.bz2
    • tracetuner
    • Freeware (Free)
    • 1.14 Mb
    • Windows; BSD; Linux
  • This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file. ...

    • Freeware (Free)
    • 10.4 Mb
    • N/A
  • A new efficient and sensitive algorithm for mapping the new sequenced reads from next-generation DNA sequencing technologies to the genome assembly..

    • Basic Oligonucleotide Alignment Tool
    • Shuqi Zhao
    • Freeware (Free)
    • Windows
  • Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million ...

    • Freeware (Free)
    • 1.14 Mb
    • Windows; BSD; Linux
  • fastqz is a compressor for the most common (Sanger format) FASTQ files produced by DNA sequencing machines. It may be used with a reference genome for better compression.

    • Freeware (Free)
    • Windows
  • An integrated bioinformatics toolkit for analysis of ChIPseq data from the Illumina DNA sequencing platform. Includes filtering, quality control, simulation, peakfinding, visualization, and comparison of samples.

    • Freeware (Free)
    • 2 Kb
    • Windows; Mac; Linux

Related:  Dna Sequencing Berkeley - Dna Sequencing Explained - Dna Sequencing Software - Dna Sequencing Methods - Sequencing Sequencing

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